GENSCAN Tool name | GENSCAN |
---|
URL | http://genes.mit.edu/GENSCAN.html |
---|
Important features | Predicts the locations and exon-intron structures of genes in genomic sequences from a variety of organisms. |
---|
Citations | Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 1997 Apr 25;268(1):78-94. PubMed PMID: 9149143.
|
---|
Year of publication | 1997 |
---|
Rank by usage frequency | 100 |
---|
Comments | 1) One can request for a local copy of program to process large number of sequences. 2) Also gives frame and phase information of exon. |
---|
Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail: length, Exon detail direct information, Predicted protein sequences, Species, Finds alternative splicing in Arabidopsis, Finds alternative splicing in other species |
---|
Category | |
---|
Input file format | Sequence in FASTA format |
---|
Output file format | Tabular form |
---|
Limitation | |
---|
| |